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    袁东晨, 张宁, 余彤, 李奇, 陶裕凯, 尤红娟, 孔凡运, 汤仁仙. 基于转录组测序对LASP1调控的肝癌细胞基因及相关功能的分析[J]. 徐州医科大学学报, 2020, 40(10): 703-709. DOI: 10.3969/j.issn.2096-3882.2020.10.001
    引用本文: 袁东晨, 张宁, 余彤, 李奇, 陶裕凯, 尤红娟, 孔凡运, 汤仁仙. 基于转录组测序对LASP1调控的肝癌细胞基因及相关功能的分析[J]. 徐州医科大学学报, 2020, 40(10): 703-709. DOI: 10.3969/j.issn.2096-3882.2020.10.001
    The analysis of genes and associated functions regulated by LASP1 in hepatoma cells ba<x>sed on transc<x>riptome sequencing[J]. Journal of Xuzhou Medical University, 2020, 40(10): 703-709. DOI: 10.3969/j.issn.2096-3882.2020.10.001
    Citation: The analysis of genes and associated functions regulated by LASP1 in hepatoma cells ba<x>sed on transc<x>riptome sequencing[J]. Journal of Xuzhou Medical University, 2020, 40(10): 703-709. DOI: 10.3969/j.issn.2096-3882.2020.10.001

    基于转录组测序对LASP1调控的肝癌细胞基因及相关功能的分析

    The analysis of genes and associated functions regulated by LASP1 in hepatoma cells ba<x>sed on transc<x>riptome sequencing

    • 摘要: 目的 检测LASP1在肝癌细胞中导致的基因表达变化,为深入研究LASP1介导肝癌发生发展的分子机制提供更多生物学依据.方法 构建LASP1的真核表达质粒并转染肝癌细胞HepG2,建立过表达LASP1的肝癌细胞及相关的对照细胞.利用转录组测序技术检测2组细胞的基因表达谱.通过生物信息学方法比较2组细胞间的差异表达基因(differentially expressed genes,DEGs).通过GO、KEGG pathway和WikiPathway富集分析,探讨LASP1调控的DEGs参与的生物学过程及相关通路.通过STRING数据库构建DEGs编码蛋白的相互作用网络,寻找LASP1调控的潜在关键基因.结果 与对照细胞相比,在过表达LASP1的肝癌细胞中筛选出410种DEGs.其中308种DEGs表达上调,102种DEGs表达下调.GO富集分析结果显示,DEGs与离子跨膜转运、阳离子转运等生物学过程有关.DEGs的KEGG pathway富集结果主要与化学致癌等有关,WikiPathway富集的结果与组蛋白修饰等有关.DEGs编码蛋白之间能够形成复杂的蛋白相互作用网络,并且HIST1H1B、HIST1H4B、NCAM1、SLC17A7等基因为LASP1调控的潜在关键基因.结论 本研究揭示了LASP1在肝癌细胞中调控的基因及其参与的离子跨膜转运和化学致癌等生物学过程和通路,为深入探讨LASP1在肝癌细胞中的生物学功能及相关的分子机制提供了基础.

       

      Abstract: ob<x>jective To detect the changes of gene ex<x>pression caused by LASP1 in hepatoma cells, which could provide more basis for further study of the molecular mechanisms associated with the development of hepatocellular carcinoma mediated by LASP1. Methods The eukaryotic ex<x>pression plasmids of LASP1 were constructed, and transfected into HepG2 cells, to establish the hepatoma cells overexpressing LASP1 and related control cells; the gene ex<x>pression profiles of the two groups of cells were detected by transc<x>riptome sequencing technology; the differentially expressed genes (DEGs) between the two groups of cells were compared by bioinformatics analysis. GO, KEGG pathway and WikiPathway enrichment analysis were used, to explore the biological process and related pathways related to the DEGs regulated by LASP1; ba<x>sed on the STRING databa<x>se, the interaction network of proteins encoded by the DEGs, and the potential key genes regulated by lasp1was also explored. Results Compared with the control cells, 410 DEGs were screened out in hepatoma cells overexpressing LASP1. 308 DEGs were up-regulated and 102 DEGs down-regulated. The results of GO enrichment analysis showed that the DEGs were related to the biological processes of ion transmembrane transport, cation transport, and et al. The results of KEGG pathway analysis showed that the DEGs were mainly associated with chemical carcinogenesis and et al. The results of WikiPathway analysis showed that the DEGs were related to histone modification and et al. The proteins encoded by DEGs could form a complex protein interaction network, and the genes, including HIST1H1B, HIST1H4B, NCAM1, SLC17A7 were potential key genes regulated by LASP1. Conclusions This study reveals the genes regulated by LASP1 in hepatoma cells and their involved biological processes and related pathways. The finding provides a basis for further study of the biological functions and related molecular mechanisms mediated by LASP1 in hepatoma cells.

       

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