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    单鸿剑, 蒋允昌, 冯虎, 高啸, 袁峰, 孙伟. 膝关节骨性关节炎核心基因和关键通路的鉴别[J]. 徐州医科大学学报, 2020, 40(4): 274-277.
    引用本文: 单鸿剑, 蒋允昌, 冯虎, 高啸, 袁峰, 孙伟. 膝关节骨性关节炎核心基因和关键通路的鉴别[J]. 徐州医科大学学报, 2020, 40(4): 274-277.
    Identification of key genes and key pathways in knee osteoarthritis[J]. Journal of Xuzhou Medical University, 2020, 40(4): 274-277.
    Citation: Identification of key genes and key pathways in knee osteoarthritis[J]. Journal of Xuzhou Medical University, 2020, 40(4): 274-277.

    膝关节骨性关节炎核心基因和关键通路的鉴别

    Identification of key genes and key pathways in knee osteoarthritis

    • 摘要: 目的 膝关节骨性关节炎(Knee osteoarthritis,KOA)是一种以软骨基质、软骨断裂和软骨下骨破坏为特征的退行性关节疾病,KOA的发病机制往往是关节软骨软骨下骨应力刺激的改变,最终导致关节软骨的破坏,导致骨关节炎的发生,但是其具体的分子机制尚不清楚。本研究的目的是通过分析人类KOA患者中半月板的基因表达变化,探究骨关节炎发病机制中的核心基因和关键信号通路。方法 首先,我们在GEO数据库下载mRNA表达数据集GSE45233。然后,我们将基因芯片中因KOA行半月板切除和因外伤行半月板切除的病人组织样本分为KOA组和非KOA组,对2组的基因芯片数据进行差异表达基因(differentially expressed?genes, DEGs)的筛选。对得到的DEGs进行基因功能注释和信号通路富集分析。构建蛋白质-蛋白质相互作用(protein-protein interaction, PPI)网络,并且对PPI网络进行核心模块筛选和信号通路富集分析,以找出与KOA相关的核心基因的关键信号通路。结果 信号通路富集显示甲状旁腺激素合成,分泌与激活、粘附斑、PPAR信号通路、趋化因子信号通路和白细胞介素17信号通路可能与KOA的发病机制密切相关。通过PPI网络得到10个可能参与KOA的潜在核心基因BDNF,SNAP25,CREB1,FPR2,FYN,RTP3,IL2,OPRM1,ADCY8和ADCY5,它们可能成为未来KOA治疗药物的候选基因。结论 本研究首次鉴定出了可能与KOA相关的关键信号通路,筛选出了10个候选核心基因,为KOA的基因治疗提供了新的靶点和途径。

       

      Abstract: ob<x>jective Knee osteoarthritis (KOA) is a degenerative joint disease characterized by cartilage matrix, cartilage fracture and subchondral bone destruction. The pathogenesis of knee joint KOA is often the change of subchondral bone stress stimulation of articular cartilage, which eventually leads to the destruction of articular cartilage and the occurrence of osteoarthritis, but its specific molecular mechanism is not clear. The purpose of this study is to explore the core genes and key signal pathways in the pathogenesis of osteoarthritis by analyzing the changes of meniscus gene ex<x>pression in human KOA patients. Methods First, we download the mRNA ex<x>pression dataset GSE45233 from the GEO databa<x>se. Then, we divided the tissue samples of patients who underwent meniscectomy because of KOA and meniscectomy because of trauma into KOA group and non-KOA group, and screened the differentially expressed genes (DEGs) from the gene chip data of the two groups. The gene function annotation and signal pathway enrichment analysis of the obtained DEGs were carried out. Protein-protein interaction (PPI) network was constructed, and core module screening and signal pathway enrichment analysis of PPI network were carried out to find out the key signal pathways of core genes related to KOA. Results Signal pathway enrichment shows parathyroid hormone synthesis, secretion and activation, focal adhesion, PPAR signal pathway, chemokine signal pathway and IL-17 signal pathway may be closely related to the pathogenesis of KOA. Ten potential core genes BDNF, SNAP25, CREB1, FPR2, FYN, RTP3, IL2, OPRM1, ADCY8 and ADCY5, which may be involved in KOA were obtained through PPI network, which may be candidate genes for KOA therapy in the future. Conclusion In this study, the key signal pathways that may be related to KOA were identified for the first time, and 10 candidate core genes were screened, which provided a new target and pathway for gene therapy of KOA

       

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